Detailed information of SNP:
|
SNP ID:
sf0224999206(Gbrowse)
Chromosome: chr02 Position: 24999206 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 93.91% | 6.09% |
| All Indica | 787 | 93.27% | 6.73% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 58 | 51.72% | 48.28% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 202 | 78.22% | 21.78% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224999206 | C->T | INTERGENIC | None |