Detailed information of SNP:
|
SNP ID:
sf0225006510(Gbrowse)
Chromosome: chr02 Position: 25006510 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 50.11% | 49.89% |
| All Indica | 799 | 79.35% | 20.65% |
| All Japonica | 496 | 6.25% | 93.75% |
| Aus | 66 | 19.70% | 80.30% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225006510 | T->C | INTERGENIC | None |