Detailed information of SNP:
|
SNP ID:
sf0225022651(Gbrowse)
Chromosome: chr02 Position: 25022651 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 94.69% | 5.31% |
| All Indica | 773 | 90.56% | 9.44% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 92.24% | 7.76% |
| Indica II | 206 | 89.32% | 10.68% |
| Indica Intermediate | 206 | 88.83% | 11.17% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225022651 | T->A | INTERGENIC | None |