Detailed information of SNP:
|
SNP ID:
sf0225026868(Gbrowse)
Chromosome: chr02 Position: 25026868 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 80.98% | 19.02% |
| All Indica | 788 | 73.86% | 26.14% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 63 | 25.40% | 74.60% |
| Indica I | 373 | 85.79% | 14.21% |
| Indica II | 210 | 63.33% | 36.67% |
| Indica Intermediate | 205 | 62.93% | 37.07% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225026868 | C->T | LOC_Os02g41690(LOC_Os02g41690.1) | Non-Synonymous SNP |