Detailed information of SNP:
|
SNP ID:
sf0225030661(Gbrowse)
Chromosome: chr02 Position: 25030661 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 91.12% | 8.88% |
| All Indica | 779 | 89.99% | 10.01% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 38.46% | 61.54% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 204 | 71.08% | 28.92% |
| Indica Intermediate | 201 | 92.04% | 7.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225030661 | C->T | LOC_Os02g41696(LOC_Os02g41696.1) | Non-Synonymous SNP |