Detailed information of SNP:
|
SNP ID:
sf0225031348(Gbrowse)
Chromosome: chr02 Position: 25031348 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 81.61% | 18.39% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 497 | 55.53% | 44.47% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 44.78% | 55.22% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225031348 | T->C | LOC_Os02g41696(LOC_Os02g41696.1) | Non-Synonymous SNP |