Detailed information of SNP:
|
SNP ID:
sf0225031583(Gbrowse)
Chromosome: chr02 Position: 25031583 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 97.25% | 2.75% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225031583 | C->T | LOC_Os02g41696(LOC_Os02g41696.1) | Non-Synonymous SNP |