Detailed information of SNP:
|
SNP ID:
sf0225066362(Gbrowse)
Chromosome: chr02 Position: 25066362 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 63.94% | 36.06% |
| All Indica | 797 | 40.78% | 59.22% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 29.95% | 70.05% |
| Indica II | 212 | 46.70% | 53.30% |
| Indica Intermediate | 211 | 54.03% | 45.97% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225066362 | A->G | INTERGENIC | None |