Detailed information of SNP:
|
SNP ID:
sf0225072872(Gbrowse)
Chromosome: chr02 Position: 25072872 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 81.56% | 18.44% |
| All Indica | 792 | 75.51% | 24.49% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 66 | 25.76% | 74.24% |
| Indica I | 373 | 85.52% | 14.48% |
| Indica II | 211 | 61.61% | 38.39% |
| Indica Intermediate | 208 | 71.63% | 28.37% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225072872 | G->T | LOC_Os02g41720(LOC_Os02g41720.1) | INTRON |