Detailed information of SNP:
|
SNP ID:
sf0225081477(Gbrowse)
Chromosome: chr02 Position: 25081477 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1370 | 94.09% | 5.91% |
| All Indica | 757 | 90.22% | 9.78% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 367 | 91.01% | 8.99% |
| Indica II | 193 | 89.12% | 10.88% |
| Indica Intermediate | 197 | 89.85% | 10.15% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225081477 | C->T | INTERGENIC | None |