Detailed information of SNP:
|
SNP ID:
sf0225091025(Gbrowse)
Chromosome: chr02 Position: 25091025 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 89.06% | 10.94% |
| All Indica | 763 | 86.89% | 13.11% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 65 | 30.77% | 69.23% |
| Indica I | 357 | 99.44% | 0.56% |
| Indica II | 206 | 65.05% | 34.95% |
| Indica Intermediate | 200 | 87.00% | 13.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225091025 | C->T | LOC_Os02g41740(LOC_Os02g41740.1) | Synonymous |