Detailed information of SNP:
|
SNP ID:
sf0225095669(Gbrowse)
Chromosome: chr02 Position: 25095669 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 82.47% | 17.53% |
| All Indica | 788 | 76.27% | 23.73% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 64 | 34.38% | 65.62% |
| Indica I | 372 | 85.48% | 14.52% |
| Indica II | 208 | 65.38% | 34.62% |
| Indica Intermediate | 208 | 70.67% | 29.33% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225095669 | G->A | LOC_Os02g41750(LOC_Os02g41750.1) | Synonymous |