Detailed information of SNP:
|
SNP ID:
sf0225096586(Gbrowse)
Chromosome: chr02 Position: 25096586 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 80.85% | 19.15% |
| All Indica | 790 | 74.30% | 25.70% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 370 | 84.32% | 15.68% |
| Indica II | 212 | 60.85% | 39.15% |
| Indica Intermediate | 208 | 70.19% | 29.81% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225096586 | G->A | INTERGENIC | None |