Detailed information of SNP:
|
SNP ID:
sf0225128564(Gbrowse)
Chromosome: chr02 Position: 25128564 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 87.66% | 12.34% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 480 | 74.58% | 25.42% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 321 | 72.90% | 27.10% |
| Tropical Japonica | 92 | 75.00% | 25.00% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225128564 | G->A | LOC_Os02g41800(LOC_Os02g41800.1) | Synonymous |
| sf0225128564 | G->A | LOC_Os02g41800(LOC_Os02g41800.2) | Synonymous |