Detailed information of SNP:
|
SNP ID:
sf0225132357(Gbrowse)
Chromosome: chr02 Position: 25132357 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 85.32% | 14.68% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 470 | 68.09% | 31.91% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 317 | 66.88% | 33.12% |
| Tropical Japonica | 90 | 73.33% | 26.67% |
| Japonica Intermediate | 63 | 66.67% | 33.33% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225132357 | G->A | INTERGENIC | None |