Detailed information of SNP:
|
SNP ID:
sf0225135127(Gbrowse)
Chromosome: chr02 Position: 25135127 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 62.38% | 37.62% |
| All Indica | 796 | 78.64% | 21.36% |
| All Japonica | 495 | 36.36% | 63.64% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 76.80% | 23.20% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 208 | 84.62% | 15.38% |
| Temperate Japonica | 334 | 42.22% | 57.78% |
| Tropical Japonica | 93 | 25.81% | 74.19% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225135127 | G->A | INTERGENIC | None |