Detailed information of SNP:
|
SNP ID:
sf0225137028(Gbrowse)
Chromosome: chr02 Position: 25137028 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 86.78% | 13.22% |
| All Indica | 798 | 96.12% | 3.88% |
| All Japonica | 473 | 71.46% | 28.54% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 92.25% | 7.75% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 322 | 71.74% | 28.26% |
| Tropical Japonica | 89 | 69.66% | 30.34% |
| Japonica Intermediate | 62 | 72.58% | 27.42% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225137028 | C->T | INTERGENIC | None |