Detailed information of SNP:
|
SNP ID:
sf0225140164(Gbrowse)
Chromosome: chr02 Position: 25140164 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 87.02% | 12.98% |
| All Indica | 768 | 78.26% | 21.74% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 358 | 64.53% | 35.47% |
| Indica II | 203 | 92.12% | 7.88% |
| Indica Intermediate | 207 | 88.41% | 11.59% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225140164 | G->A | INTERGENIC | None |