Detailed information of SNP:
|
SNP ID:
sf0225142911(Gbrowse)
Chromosome: chr02 Position: 25142911 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 71.42% | 28.58% |
| All Indica | 797 | 76.91% | 23.09% |
| All Japonica | 497 | 70.22% | 29.78% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 82.93% | 17.07% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 209 | 69.86% | 30.14% |
| Temperate Japonica | 335 | 62.69% | 37.31% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225142911 | T->C | LOC_Os02g41820(LOC_Os02g41820.1) | INTRON |