Detailed information of SNP:
|
SNP ID:
sf0225143100(Gbrowse)
Chromosome: chr02 Position: 25143100 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 72.44% | 27.56% |
| All Indica | 795 | 77.23% | 22.77% |
| All Japonica | 497 | 72.43% | 27.57% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 373 | 83.65% | 16.35% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 209 | 70.81% | 29.19% |
| Temperate Japonica | 335 | 63.28% | 36.72% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225143100 | A->G | INTERGENIC | None |