Detailed information of SNP:
|
SNP ID:
sf0225143268(Gbrowse)
Chromosome: chr02 Position: 25143268 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 84.72% | 15.28% |
| All Indica | 796 | 83.17% | 16.83% |
| All Japonica | 495 | 84.85% | 15.15% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 208 | 86.54% | 13.46% |
| Temperate Japonica | 333 | 87.09% | 12.91% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225143268 | A->T | INTERGENIC | None |