Detailed information of SNP:
|
SNP ID:
sf0225147397(Gbrowse)
Chromosome: chr02 Position: 25147397 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 54.06% | 45.94% |
| All Indica | 797 | 76.16% | 23.84% |
| All Japonica | 474 | 12.03% | 87.97% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 75.73% | 24.27% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 209 | 77.51% | 22.49% |
| Temperate Japonica | 317 | 7.57% | 92.43% |
| Tropical Japonica | 91 | 24.18% | 75.82% |
| Japonica Intermediate | 66 | 16.67% | 83.33% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225147397 | G->A | LOC_Os02g41840(LOC_Os02g41840.1) | UTR_3_PRIME |