Detailed information of SNP:
|
SNP ID:
sf0225150334(Gbrowse)
Chromosome: chr02 Position: 25150334 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 77.31% | 22.69% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 493 | 46.65% | 53.35% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 332 | 50.60% | 49.40% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 67 | 44.78% | 55.22% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225150334 | G->A | INTERGENIC | None |