Detailed information of SNP:
|
SNP ID:
sf0225156255(Gbrowse)
Chromosome: chr02 Position: 25156255 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 94.82% | 5.18% |
| All Indica | 797 | 97.62% | 2.38% |
| All Japonica | 489 | 89.37% | 10.63% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 331 | 90.63% | 9.37% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 64 | 78.12% | 21.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225156255 | G->A | INTERGENIC | None |