Detailed information of SNP:
|
SNP ID:
sf0225173255(Gbrowse)
Chromosome: chr02 Position: 25173255 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 73.08% | 26.92% |
| All Indica | 799 | 82.98% | 17.02% |
| All Japonica | 497 | 53.12% | 46.88% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 43.58% | 56.42% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225173255 | C->A | LOC_Os02g41890(LOC_Os02g41890.1) | Synonymous |