Detailed information of SNP:
|
SNP ID:
sf0225181791(Gbrowse)
Chromosome: chr02 Position: 25181791 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 76.17% | 23.83% |
| All Indica | 799 | 93.12% | 6.88% |
| All Japonica | 488 | 47.75% | 52.25% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 332 | 52.71% | 47.29% |
| Tropical Japonica | 93 | 33.33% | 66.67% |
| Japonica Intermediate | 63 | 42.86% | 57.14% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225181791 | G->A | INTERGENIC | None |