Detailed information of SNP:
|
SNP ID:
sf0225185562(Gbrowse)
Chromosome: chr02 Position: 25185562 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 93.29% | 6.71% |
| All Indica | 796 | 92.46% | 7.54% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 210 | 77.14% | 22.86% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225185562 | C->T | INTERGENIC | None |