Detailed information of SNP:
|
SNP ID:
sf0225187288(Gbrowse)
Chromosome: chr02 Position: 25187288 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 88.51% | 11.49% |
| All Indica | 799 | 97.12% | 2.88% |
| All Japonica | 480 | 72.29% | 27.71% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 324 | 72.53% | 27.47% |
| Tropical Japonica | 91 | 83.52% | 16.48% |
| Japonica Intermediate | 65 | 55.38% | 44.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225187288 | G->A | LOC_Os02g41910(LOC_Os02g41910.1) | Non-Synonymous SNP |