Detailed information of SNP:
|
SNP ID:
sf0225193843(Gbrowse)
Chromosome: chr02 Position: 25193843 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 94.12% | 5.88% |
| All Indica | 799 | 97.12% | 2.88% |
| All Japonica | 490 | 88.37% | 11.63% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 330 | 89.09% | 10.91% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 66 | 78.79% | 21.21% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225193843 | T->C | LOC_Os02g41954(LOC_Os02g41954.1) | UTR_3_PRIME |