Detailed information of SNP:
|
SNP ID:
sf0225195283(Gbrowse)
Chromosome: chr02 Position: 25195283 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 61.54% | 38.46% |
| All Indica | 798 | 38.35% | 61.65% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 27.73% | 72.27% |
| Indica II | 212 | 53.77% | 46.23% |
| Indica Intermediate | 211 | 41.71% | 58.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225195283 | G->T | LOC_Os02g41954(LOC_Os02g41954.1) | INTRON |
| sf0225195283 | G->T | LOC_Os02g41954(LOC_Os02g41954.2) | UTR_3_PRIME |