Detailed information of SNP:
|
SNP ID:
sf0225201716(Gbrowse)
Chromosome: chr02 Position: 25201716 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 93.22% | 6.78% |
| All Indica | 797 | 91.97% | 8.03% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 63.64% | 36.36% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 75.83% | 24.17% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225201716 | G->A | INTERGENIC | None |