Detailed information of SNP:
|
SNP ID:
sf0225208715(Gbrowse)
Chromosome: chr02 Position: 25208715 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 62.02% | 37.98% |
| All Indica | 799 | 38.30% | 61.70% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 27.47% | 72.53% |
| Indica II | 213 | 52.11% | 47.89% |
| Indica Intermediate | 211 | 43.60% | 56.40% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225208715 | T->C | LOC_Os02g41961(LOC_Os02g41961.1) | INTRON |