Detailed information of SNP:
|
SNP ID:
sf0225208964(Gbrowse)
Chromosome: chr02 Position: 25208964 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 70.52% | 29.48% |
| All Indica | 798 | 79.82% | 20.18% |
| All Japonica | 497 | 50.91% | 49.09% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 82.62% | 17.38% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 54.33% | 45.67% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225208964 | G->A | LOC_Os02g41961(LOC_Os02g41961.1) | INTRON |