Detailed information of SNP:
|
SNP ID:
sf0225212153(Gbrowse)
Chromosome: chr02 Position: 25212153 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1331 | 87.60% | 12.40% |
| All Indica | 716 | 80.59% | 19.41% |
| All Japonica | 494 | 99.19% | 0.81% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 319 | 65.83% | 34.17% |
| Indica II | 202 | 96.04% | 3.96% |
| Indica Intermediate | 195 | 88.72% | 11.28% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 95.60% | 4.40% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225212153 | A->T | INTERGENIC | None |