Detailed information of SNP:



SNP ID: sf0225219710(Gbrowse)

Chromosome: chr02

Position: 25219710
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 96.83% 3.17%
All Indica799 98.50% 1.50%
All Japonica497 95.98% 4.02%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 96.24% 3.76%
Indica Intermediate211 98.10% 1.90%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 80.85% 19.15%
Japonica Intermediate68 97.06% 2.94%
Group VI/Aromatic14 14.29% 85.71%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0225219710 C->T INTERGENIC None