Detailed information of SNP:



SNP ID: sf0225225265(Gbrowse)

Chromosome: chr02

Position: 25225265
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 96.41% 3.59%
All Indica799 99.37% 0.63%
All Japonica497 91.35% 8.65%
Aus67 97.01% 2.99%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 97.63% 2.37%
Temperate Japonica335 92.54% 7.46%
Tropical Japonica94 95.74% 4.26%
Japonica Intermediate68 79.41% 20.59%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0225225265 C->T INTERGENIC None