Detailed information of SNP:
|
SNP ID:
sf0225234672(Gbrowse)
Chromosome: chr02 Position: 25234672 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 83.51% | 16.49% |
| All Indica | 799 | 80.23% | 19.77% |
| All Japonica | 497 | 87.12% | 12.88% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 83.20% | 16.80% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 91.64% | 8.36% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225234672 | A->C | LOC_Os02g42000(LOC_Os02g42000.1) | INTRON |