Detailed information of SNP:
|
SNP ID:
sf0225245062(Gbrowse)
Chromosome: chr02 Position: 25245062 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 84.06% | 15.94% |
| All Indica | 798 | 80.33% | 19.67% |
| All Japonica | 497 | 88.53% | 11.47% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 83.20% | 16.80% |
| Indica II | 212 | 77.36% | 22.64% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225245062 | T->G | LOC_Os02g42020(LOC_Os02g42020.1) | INTRON |
| sf0225245062 | T->G | LOC_Os02g42020(LOC_Os02g42020.2) | INTRON |