Detailed information of SNP:
|
SNP ID:
sf0225252417(Gbrowse)
Chromosome: chr02 Position: 25252417 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 56.18% | 43.82% |
| All Indica | 798 | 68.92% | 31.08% |
| All Japonica | 496 | 38.10% | 61.90% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 81.60% | 18.40% |
| Indica II | 212 | 50.47% | 49.53% |
| Indica Intermediate | 211 | 64.93% | 35.07% |
| Temperate Japonica | 335 | 46.27% | 53.73% |
| Tropical Japonica | 93 | 16.13% | 83.87% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225252417 | T->C | INTERGENIC | None |