Detailed information of SNP:
|
SNP ID:
sf0225255868(Gbrowse)
Chromosome: chr02 Position: 25255868 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 56.05% | 43.95% |
| All Indica | 792 | 32.07% | 67.93% |
| All Japonica | 466 | 96.35% | 3.65% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 374 | 18.45% | 81.55% |
| Indica II | 211 | 52.13% | 47.87% |
| Indica Intermediate | 207 | 36.23% | 63.77% |
| Temperate Japonica | 316 | 99.05% | 0.95% |
| Tropical Japonica | 87 | 87.36% | 12.64% |
| Japonica Intermediate | 63 | 95.24% | 4.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225255868 | G->A | INTERGENIC | None |