Detailed information of SNP:
|
SNP ID:
sf0225266952(Gbrowse)
Chromosome: chr02 Position: 25266952 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 71.37% | 28.63% |
| All Indica | 798 | 80.83% | 19.17% |
| All Japonica | 497 | 51.31% | 48.69% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 84.00% | 16.00% |
| Indica II | 212 | 76.89% | 23.11% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 41.19% | 58.81% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225266952 | T->A | INTERGENIC | None |