Detailed information of SNP:
|
SNP ID:
sf0225279930(Gbrowse)
Chromosome: chr02 Position: 25279930 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 71.60% | 28.40% |
| All Indica | 799 | 81.35% | 18.65% |
| All Japonica | 497 | 51.31% | 48.69% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 84.00% | 16.00% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 41.19% | 58.81% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225279930 | A->G | INTERGENIC | None |