Detailed information of SNP:
|
SNP ID:
sf0225310214(Gbrowse)
Chromosome: chr02 Position: 25310214 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 84.47% | 15.53% |
| All Indica | 797 | 97.74% | 2.26% |
| All Japonica | 497 | 60.36% | 39.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 59.70% | 40.30% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225310214 | G->A | INTERGENIC | None |