Detailed information of SNP:
|
SNP ID:
sf0225312168(Gbrowse)
Chromosome: chr02 Position: 25312168 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 69.39% | 30.61% |
| All Indica | 798 | 79.07% | 20.93% |
| All Japonica | 497 | 49.70% | 50.30% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 82.89% | 17.11% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 41.49% | 58.51% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225312168 | A->G | LOC_Os02g42110(LOC_Os02g42110.1) | INTRON |