Detailed information of SNP:
|
SNP ID:
sf0225351073(Gbrowse)
Chromosome: chr02 Position: 25351073 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 96.33% | 3.67% |
| All Indica | 798 | 97.12% | 2.88% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 63.08% | 36.92% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225351073 | G->C | LOC_Os02g42160(LOC_Os02g42160.1) | Non-Synonymous SNP |