Detailed information of SNP:
|
SNP ID:
sf0225353719(Gbrowse)
Chromosome: chr02 Position: 25353719 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 86.02% | 13.98% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 496 | 61.29% | 38.71% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 45.81% | 54.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225353719 | A->C | LOC_Os02g42160(LOC_Os02g42160.1) | Non-Synonymous SNP |