Detailed information of SNP:
|
SNP ID:
sf0225354061(Gbrowse)
Chromosome: chr02 Position: 25354061 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 69.67% | 30.33% |
| All Indica | 790 | 63.54% | 36.46% |
| All Japonica | 496 | 75.20% | 24.80% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 370 | 47.03% | 52.97% |
| Indica II | 211 | 73.93% | 26.07% |
| Indica Intermediate | 209 | 82.30% | 17.70% |
| Temperate Japonica | 334 | 76.05% | 23.95% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225354061 | C->T | LOC_Os02g42160(LOC_Os02g42160.1) | Non-Synonymous SNP |