Detailed information of SNP:
|
SNP ID:
sf0225356647(Gbrowse)
Chromosome: chr02 Position: 25356647 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1325 | 56.38% | 43.62% |
| All Indica | 730 | 86.58% | 13.42% |
| All Japonica | 476 | 7.35% | 92.65% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 333 | 85.59% | 14.41% |
| Indica II | 201 | 92.54% | 7.46% |
| Indica Intermediate | 196 | 82.14% | 17.86% |
| Temperate Japonica | 325 | 2.46% | 97.54% |
| Tropical Japonica | 88 | 20.45% | 79.55% |
| Japonica Intermediate | 63 | 14.29% | 85.71% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225356647 | C->T | INTERGENIC | None |