Detailed information of SNP:
|
SNP ID:
sf0225361624(Gbrowse)
Chromosome: chr02 Position: 25361624 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 77.67% | 22.33% |
| All Indica | 775 | 65.29% | 34.71% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 50.77% | 49.23% |
| Indica I | 367 | 73.30% | 26.70% |
| Indica II | 205 | 64.88% | 35.12% |
| Indica Intermediate | 203 | 51.23% | 48.77% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225361624 | G->T | LOC_Os02g42180(LOC_Os02g42180.1) | Non-Synonymous SNP |