Detailed information of SNP:
|
SNP ID:
sf0225393115(Gbrowse)
Chromosome: chr02 Position: 25393115 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 59.17% | 40.83% |
| All Indica | 799 | 43.18% | 56.82% |
| All Japonica | 497 | 92.96% | 7.04% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 55.47% | 44.53% |
| Indica II | 213 | 33.33% | 66.67% |
| Indica Intermediate | 211 | 31.28% | 68.72% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0225393115 | G->A | INTERGENIC | None |